Prof. Dr. Mario Stanke

Professor of Bioinformatics


Contact

Prof. Dr. Mario Stanke

Institut für Mathematik und Informatik
Walther-Rathenau-Straße 47
17489 Greifswald

Office: Felix-Hausdorff-Str. 8, room 0.63 (C_FunGene building)

Telefon +49 3834 420 4642
mario.stankeuni-greifswaldde 

Research interests

A major interest of my group are probabilistic models and machine learning methods for structured biological data and efficient algorithms for inference in these models. In particular we are developing, training and implementing recurrent neural networks,  conditional random fields for different concrete applications such as gene prediction and multiple sequence alignments. Research topics include in particlular the gene finding suites AUGUSTUS and BRAKER. For gene prediction services and more information refer to our Bioinformatics Web Server.

Publications

Publications

Bachelor- and Master Thesis Topics

If you are interested in writing a Bachelors or Masters thesis with me, talk to me or write a short email to make an appointment.

Teaching

WS 2024/2025

  • Data Structures and Effizient Algorithms (4V+2Ü)
  • Genom Analysis (2V+2Ü)
  • Molekular Evolution (?) (2V+2Ü)

SS 2024

  • Probabilistical Graphical Models (3V+1Ü)
  • Seminar Machine Learning in Bioinformatics (2S)
  • Bioinformatics (2V+2Ü)