Bioinformatics

General

Modulbeschreibung

Lecturer: Marc Hellmuth
Tutor:     Nikolai Nøjgaard - nnoej10[at]student[dot]sdu[dot]dk

Previous Knowledge:

  • Genomanalyse, Bioinformatisches Praktikum
  • Familiarity with discrete mathematics

Certificate Requirements:

  • 50% correctly solved problems in the exercises
  • Active participation in tutorials
  • Pass exam

Dates and News

  • Oral Exams: 17. July and 18. July
  • Lecture starts on Tuesday 4. April at 8.15pm - Franz-Mehring-Straße 47/48 - SR 2
  • Tutorial starts on Thursday 13. April at 12.15pm - Franz-Mehring-Straße 47/48 - SR 2

ORAL EXAM
Time   / Date / Name

8:30   / 17.7 / LB
9:10   / 17.7 / ST
9:50   / 17.7 / ALK
10:30 / 17.7 / AW
11:10 / 17.7 / RW
13:00 / 17.7 / FB
13:40 / 17.7 / AH
14:20 / 17.7 / WB

8:30   / 18.7 / EB
9:10   / 18.7 / CS
9:50   / 18.7 / CB
10:30 / 18.7 / JF
11:10 / 18.7 / AKW
13:00 / 18.7 / OS
13:40 / 18.7 / PB
14:20 / 18.7 / FJFB
15:00 / 18.7 / SK

 

 

 

Material Lectures

(Partial) Lecture Script

Lecture           

Lecture 1:     

Lecture 1:     

Lecture 2+3:
              

Lecture 4+5:  
                        

Lecture 6:       

Lecture 7-9:  

Lecture 9-13:    

Slides                                                         

Orga

WarmUp + Cracking the Genetic Code         

Shotgun Sequencing                                  
                                                                 

Pattern Matching + Seqence Alignments     
                                                                 

Intro Graphs

RNAs                                                         

Phylogenetics

 

Material Exercises

(Exercise //  Deadline // Extra Material)

Recommended Literature

  • "Introduction to Computational Biology: Maps, Sequences and Genomes", Michael S. Waterman
  • "Understanding Bioinformatics", Marketa J. Zvelebil
  • "Algorithms on Strings, Trees and Sequences: Computer Science and Computational Biology", Dan Gusfield
  • "RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods" Gorodkin, Jan, Ruzzo, Walter L. (Eds.)
  • "Phylogenetics", Charles Semple and Mike Steel
  • "Handbook of Product Graphs, Second Edition (Discrete Mathematics and Its Applications)", Richard Hammack, Wilfried Imrich and Sandi Klavzar